bioinformatics

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Matlab: seqlogo with uniform plot column heights

In Matlab, I want to make a seqlogo plot o开发者_开发问答f an amino acid sequence profile. But instead of scaling the heights of the plot columns by entropy, I want all the columns to be the same heig[详细]

2023-02-13 13:02 分类：问答
Sending a SOAP query to reactome.org with curl

(Note: this question was cross-posted on Biostar) Hi all, I\'m trying to send a RPC-encoded SOAP query to Reactome (a biological pathways database),using curl:[详细]

2023-02-09 19:33 分类：问答
perl Script to search for a motif in a multifasta file and print the complete sequence along with the header line

I am able to search a motif in a multi fasta file and print the line containing the motif.... but i need to print all the sequences along with the header line of the motif containing fasta sequence. P[详细]

2023-02-09 08:14 分类：问答
How do I find the count and location of two substrings in two different files?

From two seque开发者_StackOverflow社区nces given I need to check for every three codons and if the changes are same as in the following list, then I have to check out the location of changes and the c[详细]

2023-02-08 10:55 分类：问答
Bioinformatics - Need to get the ATOMS sequence

I search a method in BioJava to get the Atom sequence from a PDB file. I watched the BioJava API but for the getAtomSequence() 开发者_StackOverflow社区it catches the amino acids.[详细]

2023-02-07 15:52 分类：问答
Efficient file buffering & scanning methods for large files in python

The description of the problem I am having is a bit complicated, and I will err on the side of providing more complete information. For the impatient, here is the briefest way I can summarize it:[详细]

2023-02-06 23:27 分类：问答
A question on Volacano Plot

I was trying to make a volcano plot with some real data, using log2(ratio) vs. Z-value significance. However the scatter of the points is too less contrary to \'normal\' volcano plots and I\'m getting[详细]

2023-02-05 21:17 分类：问答
Is there a library similar to PyCogent, but in Java (or Scala)?

I\'m writing a biological evolution simulator.Currently, all of my code is written in Python.For the most part, this is great and everything works sufficiently well.However, there are two steps in the[详细]

2023-02-05 17:48 分类：问答
Processing Chromosomal Data in Ruby

Say I have a file of chromosomal data I\'m processing with Ruby, #Base_IDSegment_IDRead_Depth 1100 2800 3seg11900[详细]

2023-02-02 12:20 分类：问答
Silverlight demo for bioinformatics

I am a beginner Silverlight programmer preparing for the inte开发者_运维知识库rview in medical research company. Job sounds damn interesting and I would like to get there.[详细]

2023-02-01 10:30 分类：问答