bioinformatics

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Best way to organize bioinformatics projects? [closed]

Closed. This question is opinion-based. It is not currently accepting answers. Want to improve this question? Update the question so it can be answered with facts and citations by editing[详细]

2023-01-16 20:00 分类：问答
combine two lists with a join on a column

I\'m trying to combine two lists, joining them by a common field suchs as ENST00000371026. I\'ve tried the following but no luck.What is the actual way to do it?[详细]

2023-01-16 16:15 分类：问答
Using awk create two arrays from two column values, find difference and sum differences, and output data

I have a file with the following fields (and an example value to the right): hg18.ensGene.bin 0 hg18.ensGene.name ENST00000371026[详细]

2023-01-16 13:08 分类：问答
MongoDB: What’s the most efficient way to store a chromosome/position

I want to store some genomic positions (chromosome,position) using MongoDB. something like: { chrom:\"chr2\",[详细]

2023-01-16 11:36 分类：问答
How to visualize gene networks and cluster groups of genes?

I\'m working with biological data 开发者_高级运维- namely groups of genes. For example: group 1: geneA geneB geneC[详细]

2023-01-16 02:40 分类：问答
How do you use Ruby on Rails for science (if applicable)?

We do research in systems biology. We prefer to use existing data sets, because collecting new biological data is expensive. Thus, a lot of the scripts we write are little more than transformations of[详细]

2023-01-14 09:13 分类：问答
Fast Sequence Alignment on Unicode Strings

I want to run something like the BLAST algorithm to query a large database of unicode strings.开发者_C百科Most of the alignment software like BLAST expects nucleotide or protein strings as input.But m[详细]

2023-01-10 00:11 分类：问答
Improving clojure lazy-seq usage for iterative text parsing

I\'m writing a Clojure implementation of this coding challenge, attempting to find the average length of sequence records in Fasta format:[详细]

2023-01-08 20:32 分类：问答
"average length of the sequences in a fasta file": Can you improve this Erlang code?

I\'m trying to get the mean length of fasta sequences using Erlang. A fasta file looks like this >title1[详细]

2023-01-08 17:38 分类：问答
Learning JBoss drools: what should be my model

I\'m learning JBoss Drools and I\'m playing with the genetics data from the hapmap project: ( http://hapmap.ncbi.nlm.nih.gov/genotypes/latest/forward/non-redundant/ ) . Each file in this directory is[详细]

2023-01-08 06:02 分类：问答