dendrogram

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How to convert a tree to a dendrogram in R?

How can I convert a tree (which is the output of my Java program) to a dendrogram in R? Currently, I am converting the tree into the Newick format, using the suggestion given here. And then I use th[详细]

2023-04-05 03:51 分类：问答
How to plot dendrograms with large datasets?

I am using ape (Analysis of Phylogenetics and Evolution) package in R that has dendrogram drawing functionality. I use following commands to read the data in Newick format, and draw a dendrogram using[详细]

2023-04-04 09:08 分类：问答
How do I label the terminal nodes of a cut dendrogram?

I used the following code to cut the dendrogram at a particular height.The problem I\'m having is that when I cut a dendrogram, I can\'t figure out how to add labels to the nodes.How can I cut a dendr[详细]

2023-03-30 17:18 分类：问答
Heatmap of Microarray Data using Pearson Distance

I ha开发者_如何转开发ve been trying to generate a heatmap in R for some microarray data and for the most part have been successful in producing one, based on online instruction,but it does not do exac[详细]

2023-03-20 15:37 分类：问答
Cluster analysis with LAMP

I am looking for a way to do some data cluster analysis. This is way out of my league but i know it can be done. I am looking for ways to cluster the data that i have and present it in a visual way. O[详细]

2023-03-16 04:15 分类：问答
Draw dendrogram in python manually

I have implemented an algorithm to solve the problem of clustering in a graph. I used the python library \"python-graph\" to represent the graph. Now, at each step of my computation (the algorithm is[详细]

2023-03-15 06:46 分类：问答
How can I create a dendrogram in R using pre-clustered data created elsewhere?

I have clustering code written in Java, from which I can create a nested tree structure, e.g. the following shows a tiny piece of the tree where the two \"isRetired\" objects were clustered in the fir[详细]

2023-03-05 03:50 分类：问答
JUNG2 layout problems: resultant graphs end up too wide

I have been working on JUNG2 for a while now, trying to visualize a pretty complicated hierarchy of a set of objects. Unfortunately, this hierarchy is not really like a tree in the sense that:[详细]

2023-02-24 23:30 分类：问答
Dendrogram generated by scipy-cluster customisation

This is a follow up to Dendrogram generated by scipy-cluster does not show. from matplotlib.pyplot import show[详细]

2023-02-20 01:47 分类：问答
How do I create a radial cluster like the following code-example in Python?

I\'ve found several examples on how to create these exact hierarchies (at least I believe they are) like the following here stackoverflow.com/questions/2982929/ which work great, and almost perform wh[详细]

2023-02-12 15:54 分类：问答