bioperl

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Bioperl: notes or online references for beginners

Please suggestion, I want to get start开发者_如何学编程ed from 0. I do have experience on R. What\'s wrong with the documentation available at http://www.bioperl.org ?I found a HOWTO for beginners, an[详细]

2023-04-05 17:54 分类：问答
How can I identify which ranges a given value falls in?

I have two data sets: \'Data 1\' and \'Data 2\'.Could you please help me to find, for each value of posi in \'Data 1\', the ranges in \'Data 2开发者_如何学JAVA\' where posi lies between Star_posi and[详细]

2023-03-30 10:57 分类：问答
Find the postion of SNP in the gen list

I have SNP data and gen list data. I am looking for the position of SNP cotain in the gen list data when I compare with gen list. For example:[详细]

2023-03-29 09:23 分类：问答
Convert GenBank Flatfiles to FASTA

I need to parse a preliminary GenBank Flatfile. The sequence hasn\'t been published yet, so I can\'t look it up by accession and download a FASTA file. I\'m new to Bioinformatics, so could someone 开发[详细]

2023-03-12 10:14 分类：问答
Efficient substring matching in perl

I am looking for 开发者_如何学Pythonan efficient solution to do find the longest possible substring in a string tolerating n mismatches in the main string[详细]

2023-03-11 07:59 分类：问答
Add tag to bioperl DB::SAM/BAM

I have a bam file and use bioperl (Bio::DB::Sam) to work with it. Now i wanted to ask if there is an开发者_如何学编程y possibility to add tags to alignments in this File?[详细]

2023-03-09 20:06 分类：问答
Remove Perl modules from CPAN on Mac

As far as I know it is required to run CPAN with sudo on Mac sudo perl -MCPAN -e shell to install new modules. Theoretically, a module can be removed by deleting it from the Perl folders.[详细]

2023-01-22 05:47 分类：问答
Why won't Eclipse recognize $PERL5LIB?

I followed BioPerl manual: I cloned a fresh copy of bioperl-live under ~/src then added the following line to my ~/.profile (I\'m using Ubuntu):[详细]

2023-01-17 03:55 分类：问答
multiFASTA file processing

I was curious to know if there is any bioinformatics tool out there able to process a multiFASTA file giving me infos like number of sequences, length, nucleotide/aminoacid content, etc. and maybe aut[详细]

2022-12-12 14:26 分类：问答